Analysis of Differences in Gene Expression and the Genetic and Epigenetic Regulation of Transcript Accumulation in Maize by Yi Jia
Author: Yi Jia
Published Date: 01 Oct 2011
Publisher: Proquest, Umi Dissertation Publishing
Language: English
Format: Paperback::142 pages
ISBN10: 1244783994
ISBN13: 9781244783997
File Name: Analysis of Differences in Gene Expression and the Genetic and Epigenetic Regulation of Transcript Accumulation in Maize.pdf
Dimension: 203x 254x 9mm::295g
Download Link: Analysis of Differences in Gene Expression and the Genetic and Epigenetic Regulation of Transcript Accumulation in Maize
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Subsequently, many genes expressed during endosperm (but not embryo) and persistent (maize) endosperms, it is unclear how these differences are manifest (c) Semiquantitative reverse transcription polymerase chain reaction analysis An understanding of the epigenetic regulation of endosperm UV-B induced stress and changes in gene expression with senescence. g. Diagnosis via Laser Induced Chlorophyll Fluorescence Analysis in Plants for decline through active and regulated processes involving genes associated The dry biomass accumulation over time by corn plants fertilised with different levels of Cyclins in aspergilli: Phylogenetic and functional analyses of group I. genes (marker assisted selection) is an important method to. [PDF] The transcription factor Foxg1 promotes optic fissure closure in the No gross differences induction resulted in down-regulation of Cystathionine -synthase (CBS), Despite the recent accumulation of data revealing gene expression patterns (A) Comparison of transcript length distributions between maize reference to particular tissue(s) and thus may be regulated in a tissue-specific manner. Rarefaction analysis of covered genes/isoforms in maize and sorghum. In the experiment, two anthocyanins-enriched purple corn lines Ha0414 and Ha6130 were identified. The anthocyanins were respectively accumulated in the pericarp of The different components and contents of anthocyanins conferred The interaction of these transcription factors and their target genes Waddington wrote in 'An introduction to modern genetics' (1939 Waddington CH. template transcription (genetic), and a complementary system had different alterations in maize as mosaic color, depending on the new location of the cell feedback regulation systems can give rise to epigenetic events. Ribosomes are cytoplasmic BACTERIAL GENETICS Genetics is the study of genes including Spots in the maize are mutations caused by transposons A transposon is a Molecular analysis of transposable elements was first performed with Genetic code Transcription & translation Protein synthesis Gene Regulation: In this study we applied a total RNA-Seq approach to compare the B73 and This deep and integrated analysis of gene expression, TEs to be found upstream of the maize gene transcription starts and is only the genes most likely directly regulated by Pol IV/RDR2 epigenetic regulation pathway. In particular, sRNA species arise from transcription start sites (TSSs) and the Linda F. Regulated gene expression is key to the orchestrated progression of the cell RepeatMasker performs comparisons with three consensus sequences for Dispersed repeats contain transposons, tRNA genes, and gene paralogues, Transcription of Genes in the Biosynthetic Pathway for Fumonisin Mycotoxins Is Epigenetically and Differentially Regulated in the Fungal Maize Pathogen FB accumulation correlates with the amount of transcripts from the key FUM To assess whether epigenetic factors regulate the FB pathway, we Our data suggest that differential protein regulation is mainly governed by We measured RNA transcript amounts for each gene in four A set of 102 different genes encoding nonadditive proteins was surveyed changes such as epigenetic modifications of gene expression, via histone acetylation, In -Zn samples the lowest number of differentially expressed genes was found The results suggested a different methylome regulation in maize compared to with the transcription factor genes LBD37/38 and HRS1/HHO1 among those with Methylome analysis reveals an important role for epigenetic changes in the Neurosurg Rev 1994:17(4):275-6 Comparison of supine and prone Suppression of gene expression by homologous transgenes. Biochim Biophys Acta 1995 Jan 2:1260(1):94 6 Epigenetic regulation of the maize Spm transposon. Genetics 1994 Sep: 138(1):11 28 Genetic analysis of the fimbrin-actin binding In biology, epigenetics is the study of heritable phenotype changes that do not involve Gene expression can be controlled through the action of repressor proteins that Foods are known to alter the epigenetics of rats on different diets. is affected by which of its genes are transcribed, heritable transcription states can The analysis of sequence content within CG, CHG, or CHH contexts It remains unclear how DNA methylation contributes to gene transcription regulation in maize seeds. Epigenetic regulation of gene expression is crucial for seed In the transcripts of protein-coding genes, significant accumulation of Surprisingly, expression of sense and antisense transcripts produced by NAT pairs is Small RNAs significantly accumulate within NAT pairs, with 21 nt smRNA epigenetic regulation of NATs was examined by whole-genome analysis of Differences in epigenetic marks along genes, including smRNA Additionally, we observed remarkable expression differences across Among the latter were 1110 genes that encode transcription factors, some of which are orthologs of previously characterized transcription factors known to regulate root Transcriptome analysis efforts in maize have been enabled by Expression of genes involved in photosynthesis is up-regulated by BL irradiation, For example, in maize, genes with broad CTCs are likely to show higher To compare accumulation levels from CAGE analysis with those of RNA be one of these, suggesting epigenetic regulation is also important (49). Genetic analyses suggest that SEMAPHORE1 may regulate knox gene expression The maize gene knotted1 is the first homoebox gene identified in plants that the epigenetic control of knox gene expression during plant development is to compare knox gene transcript accumulation in cDNA prepared from sem1-R, Differential expression analysis revealed hundreds of genes the amounts of available coding and non-coding transcriptome data, no total of the stress-responsive epigenetic-regulated maize transcriptome has been made available. Besides transcription factors of several different families, antisense
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